SNPs discovery is important for detection, forensic analysis and for understanding the genetic variations among closely related microorganisms.
is a web-based program developed to facilitate the SNPs discovery process. Complete genomic sequences or contig sequences of related organisms (strains and species) can be used for this analysis. In additon to identification of the SNPs regions, primers can be picked automaticly according to user-defined parameters to assist in experimental validation of the predicted SNPs. Results from
analysis can be viewed through WWW. Click
for User's Manual.
This application was developed with support from the Federal Bureau of Investigation (FBI), the Department of Homeland Security (DHS) and the Department of Defense (DOD).
Please cite this software in your publications as:
Song, J., Y. Xu, S. White, K. W. P. Miller, and M. Wolinsky. 2005. SNPsFinder--a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes. Bioinformatics
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